切换至 "中华医学电子期刊资源库"

中华产科急救电子杂志 ›› 2024, Vol. 13 ›› Issue (01) : 49 -54. doi: 10.3877/cma.j.issn.2095-3259.2024.01.009

实验研究

血清无细胞RNA铁死亡相关基因预测早发型子痫前期的初步研究
李剑琦1,()   
  1. 1. 510150 广州医科大学附属第三医院妇产科 广东省产科重大疾病重点实验室 广东省普通高校生殖与遗传重点实验室
  • 收稿日期:2023-05-09 出版日期:2024-02-18
  • 通信作者: 李剑琦
  • 基金资助:
    广州市卫健委科技项目(20231A011091)

Prediction of early preeclampsia with ferroptosis-related genes in plasma cell-free RNA

Jianqi Li1,()   

  1. 1. Department of Obstetrics and Gynecology, The Third Affiliated Hospital of Guangzhou Medical University, Key Laboratory of Major Obstetric Diseases of Guangdong Province, Key Laboratory of Reproduction and Genetics of Guangdong Higher Education Institutes, Guangzhou 510150, China
  • Received:2023-05-09 Published:2024-02-18
  • Corresponding author: Jianqi Li
引用本文:

李剑琦. 血清无细胞RNA铁死亡相关基因预测早发型子痫前期的初步研究[J]. 中华产科急救电子杂志, 2024, 13(01): 49-54.

Jianqi Li. Prediction of early preeclampsia with ferroptosis-related genes in plasma cell-free RNA[J]. Chinese Journal of Obstetric Emergency(Electronic Edition), 2024, 13(01): 49-54.

目的

鉴定早发型子痫前期中具有诊断意义的新型铁死亡相关基因。

方法

首先从FerrDb数据库中获取258个铁死亡相关基因,从基因表达综合数据库中获取早发型子痫前期患者的血清无细胞RNA基因表达谱和临床信息。此外,通过线性模型微阵列数据分析筛选出差异表达基因,结合韦恩图得到与铁死亡相关的基因表达谱。本研究对这些铁死亡相关基因进行了功能富集分析,进一步将获得的铁死亡相关基因采用LASSO方法构建早发型子痫前期相关特征的模型,确定一些在早发型子痫前期诊断中关键的铁死亡相关基因。

结果

首先,通过线性模型微阵列数据分析获得早发型子痫前期差异表达基因共4011个,其中上调基因2774个,下调基因1237个;其次,获得了37个与铁死亡相关的差异表达基因,涉及程序性细胞死亡、细胞凋亡、自噬、程序性死亡-配体1表达和铁死亡信号通路;再次,经过多变量生存分析,整合了胎龄、子痫前期状态和37个与铁死亡相关的差异表达基因,成功构建了LASSO诊断模型;最终发现了15个铁死亡相关基因(IFNG、AKR1C1、CAV1、SLC1A4、ENPP2、ACVR1B、ULK1、ZNF419、BID、XBP1、GPX4、MAPK14、WIPI1、DPP4、SLC7A5),成为诊断早发型子痫前期的关键基因;最后,成功构建了早发型子痫前期的15个铁死亡相关基因相关的蛋白质-蛋白质相互作用网络。

结论

血清无细胞RNA中的15个铁死亡相关基因与早发型子痫前期存在相关性,未来需要进一步验证其在早发型子痫前期诊断的价值。

Objective

To identify novel ferroptosis-associated genes with diagnostic significance in early-onset preeclampsia.

Methods

First, we obtained 258 ferroptosis-related genes from the FerrDb database, and the plasma cell-free RNA gene expression profiles and clinical information of patients with early preeclampsia from the GEO database. In addition, the differentially expressed genes were screened out by LIMMA analysis, combined with the Venn diagram to obtain the gene expression profile related to Ferroptosis. Then, we performed a functional enrichment analysis of these ferroptosis-related genes. Further use the obtained ferroptosis-related genes for LASSO to construct a model of early preeclampsia-related features, and determine some key ferroptosis-related genes in the diagnosis of early preeclampsia.

Results

First, 4011 differentially expressed genes in early preeclampsia were obtained by LIMMA analysis, of which 2774 genes were up-regulated and 1237 genes were down-regulated. Secondly, 37 differentially expressed genes related to ferroptosis were obtained, which were involved in programmed cell death, apoptosis, Autophagy, PD-L1 expression, and Ferroptosis signaling pathways. Third, after multivariate survival analysis, we integrated gestational age, preeclampsia status and 37 differentially expressed genes related to ferroptosis, and successfully constructed a LASSO diagnostic model. Finally, 15 ferroptosis-related genes (IFNG, AKR1C1, CAV1, SLC1A4, ENPP2, ACVR1B, ULK1, ZNF419, BID, XBP1, GPX4, MAPK14, WIPI1, DPP4, and SLC7A5) were discovered, which became the key genes for the diagnosis of early preeclampsia. Fourth, a protein-protein interaction network related to 15 ferroptosis-related genes was successfully constructed.

Conclusions

The 15 ferroptosis-related genes in plasma cell-free RNA have significant diagnostic value for early preeclampsia and are expected to be potential therapeutic targets for early preeclampsia.

图1 早发型子痫前期中差异表达基因的表达谱 A:子痫前期差异表达基因火山图,按1倍差异表达计算,显示上调基因2774个,下调基因1237个;B:子痫前期中差异表达基因的热图
图2 4011个差异表达基因及37个铁死亡相关基因的功能富集分析 A: 4011个差异表达基因的信号通路;B:韦恩图共获取到37个差异表达的铁死亡相关基因;C: 37个铁死亡相关基因的信号通路;D:37个铁死亡相关基因的GO功能注释
图3 Metascape和String的15个铁死亡相关基因的蛋白质-蛋白质相互作用网络 A:按集群ID着色,其中共享相同集群ID的节点通常彼此靠近;B:按p值着色,其中包含更多基因的术语往往具有更显著的p值;C,D:基因列表中确定的蛋白质-蛋白质相互作用网络和MCODE成分;E:涉及15个铁死亡相关基因的前11个簇及其代表性富集项
[1]
Rasmussen M, Reddy M, Nolan R, et al. RNA profiles reveal signatures of future health and disease in pregnancy[J]. Nature2022601(7893):422-427.
[2]
Lisonkova S, Joseph KS. Incidence of preeclampsia: risk factors and outcomes associated with early-versus late-onset disease[J]. Am J Obstet Gynecol2013209(6):544.e1-544.e12.
[3]
Walker CK, Krakowiak P, Baker A, et al. Preeclampsia, placental insufficiency, and autism spectrum disorder or developmental delay[J]. JAMA Pediatr2015169(2):154-162.
[4]
Alese MO, Moodley J, Naicker T. Preeclampsia and HELLP syndrome, the role of the liver[J]. J Matern Fetal Neonatal Med202134(1):117-123.
[5]
Chen Z, Gan J, Zhang M, et al. Ferroptosis and its emerging role in pre-eclampsia[J]. Antioxidants (Basel)202211(7):1-23.
[6]
Xie Y, Hou W, Song X, et al. Ferroptosis: process and function[J]. Cell Death Differ201623(3):369-379.
[7]
Beharier O, Kajiwara K, Sadovsky Y. Ferroptosis, trophoblast lipotoxic damage, and adverse pregnancy outcome[J]. Placenta2021108:32-38.
[8]
Liao T, Xu X, Ye X, et al. DJ-1 upregulates the Nrf2/GPX4 signal pathway to inhibit trophoblast ferroptosis in the pathogenesis of preeclampsia[J]. Sci Rep202212(1):1-16.
[9]
Ding Y, Yang X, Han X, et al. Ferroptosis-related gene expression in the pathogenesis of preeclampsia[J]. Front Genet202213:1-14.
[10]
Moufarrej MN, Vorperian SK, Wong RJ, et al. Early prediction of preeclampsia in pregnancy with cell-free RNA[J]. Nature2022602(7898):689-694.
[11]
Zhou Y, Zhou B, Pache L, et al. Metascape provides a biologist-oriented resource for the analysis of systems-level datasets[J]. Nat Commun201910(1):1-10.
[12]
王红艳,白桂芹. 子痫前期的分类[J/OL]. 中华产科急救电子杂志202110(4):197-200.
[13]
杜培丽,孙雯,苏春宏,等. 不同亚型子痫前期患者母儿结局分析[J/OL]. 中华产科急救电子杂志202211(1):33-37.
[14]
任丹玉,王永红. 凝血功能指标和血小板参数对子痫前期及其严重程度的辅助诊断价值研究[J]. 中国全科医学201922(22):2698-2704.
[15]
欧海蔚,尤共平,孙鸿彩,等. 早发型重度子痫前期血浆外泌体miRNAs表达谱分析[J]. 局解手术学杂志202332(4):293-296.
[16]
林岩. GPx4基因多态性与子痫前期遗传易感性的相关性研究[D]. 青岛:青岛大学,2017.
[17]
宋鹏书,张奕梅,彭振仁,等. 氧化应激因子和铁死亡标志物在子痫前期孕妇中的表达情况及其临床意义[J]. 广西医学202345(4):382-385,390.
[1] 乌吉斯古楞, 哈斯高娃. mir-98-5p、ALKBH1在肝门部胆管癌组织中表达及与临床病理特征的关系[J]. 中华普外科手术学杂志(电子版), 2024, 18(02): 184-187.
[2] 张琳, 李婷. CRIP1在胃癌中的表达及与临床病理指标和预后的关系研究[J]. 中华普外科手术学杂志(电子版), 2024, 18(02): 171-175.
[3] 唐旭, 韩冰, 刘威, 陈茹星. 结直肠癌根治术后隐匿性肝转移危险因素分析及预测模型构建[J]. 中华普外科手术学杂志(电子版), 2024, 18(01): 16-20.
[4] 曹飞, 庞俊. 前列腺癌免疫微环境中免疫抑制性细胞分类及其作用机制[J]. 中华腔镜泌尿外科杂志(电子版), 2024, 18(02): 121-125.
[5] 黄艺承, 梁海祺, 何其焕, 韦发烨, 杨舒博, 谭舒婷, 翟高强, 程继文. 机器学习模型评估RAS亚家族基因对膀胱癌免疫治疗的作用[J]. 中华腔镜泌尿外科杂志(电子版), 2024, 18(02): 131-140.
[6] 谭智勇, 付什, 李宁, 王海峰, 王剑松. 膀胱小细胞癌发病机制及其诊疗研究进展[J]. 中华腔镜泌尿外科杂志(电子版), 2024, 18(02): 183-187.
[7] 刘凌卉, 程铃, 张小雪, 肖敏. 环状RNA与肺部感染的研究进展[J]. 中华肺部疾病杂志(电子版), 2024, 17(01): 140-143.
[8] 吕垒, 冯啸, 何凯明, 高成立, 杨洲, 贾昌昌, 傅斌生. 组蛋白伴侣VPS72驱动H2AFZ的表达并协同促进肝癌进展[J]. 中华肝脏外科手术学电子杂志, 2024, 13(02): 220-226.
[9] 卢斌, 张天琪, 徐烨, 刘方奇. 中国人群经典型家族性腺瘤性息肉病的临床、病理和分子特征[J]. 中华结直肠疾病电子杂志, 2024, 13(01): 38-44.
[10] 周大杨, 刘畅, 黄鉴, 许宁, 吉祥, 杨可欣, 彭继邦, 潘海, 徐文静, 珠珠. 一例携带BRCA1 p.R166fs新突变位点的结肠癌病例报道[J]. 中华结直肠疾病电子杂志, 2024, 13(01): 68-71.
[11] 姚瑶, 高扬, 单军奇, 李昕豫, 韩玮, 李增军, 孙燕来. 一个新的APC基因内含子c.531+6T>G变异导致的家族性腺瘤性息肉病病例报告[J]. 中华结直肠疾病电子杂志, 2024, 13(01): 72-77.
[12] 符锋, 蒋显锋, 赵明亮, 云晨, 汤锋武. 运动皮层电刺激治疗中枢性卒中后疼痛四例并文献复习[J]. 中华脑科疾病与康复杂志(电子版), 2024, 14(01): 45-50.
[13] 蒲丹, 龙煊, 周玉龙, 李甘霖. 血清外泌体miR-224对结直肠癌肝转移患者射频消融治疗后复发的预测价值[J]. 中华消化病与影像杂志(电子版), 2024, 14(01): 45-52.
[14] 蒋心怡, 顾丹丹, 叶艳, 缪佳蓉. RNA测序研究抗菌肽KT2治疗溃疡性结肠炎的作用机制[J]. 中华消化病与影像杂志(电子版), 2024, 14(01): 8-15.
[15] 陈绚, 欧宁江, 叶洁梅, 邓瑾倩. 纤维蛋白原β链启动因子基因多态性与颈动脉粥样硬化斑块稳定性的关联性研究[J]. 中华脑血管病杂志(电子版), 2024, 18(01): 33-39.
阅读次数
全文


摘要